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  • 标题:DEVELOPMENT OF EST-SSR MARKERS IN PISTACHIO
  • 本地全文:下载
  • 作者:Muhanad W Akash ; Ahmad Ateyyeh ; Mohammed Saleh
  • 期刊名称:Fresenius Environmental Bulletin
  • 印刷版ISSN:1018-4619
  • 出版年度:2020
  • 卷号:29
  • 期号:10
  • 页码:9303-9310
  • 语种:English
  • 出版社:PSP Publishing
  • 摘要:Despite the fact that Expressed sequence tag EST-SSR markers have become one of the most preferred DNA molecular markers,only a limited number of EST-SSR molecular markers (14 EST-SSRs) is available for the genome of pistachio (Pistacia vera L.).To generate new EST-SSRs for the pistachio genome,1330 pistachio expressed ESTs at the publicly available NCBI database were searched for SSR motifs.The minimum repeat units criteria was ten for mono-nucleotide repeats (MNR),six for dinucleotide repeats (DNR),five for tri-nucleotide repeats (TNR),tetra-nucleotide repeats (TrNR),penta-nucleotide repeats (PNR),and hexa-nucleotide repeats (HNR).A total of 464 SSR motifs spanning 808095 bp were identified in 397 ESTs and primer pairs were designed for 48 SSR motifs.These EST-SSRs will not only increase the EST-SSRs limited availability in pistachio but also facilitate analyses of genetic diversity,population structure,and marker-assisted breeding programs of pistachio (Pistacia vera L.).
  • 关键词:Pistacia vera;microsatellite markers;gene-derived SSRs;functional SSRs;CAP3;function-al annotation
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