摘要：SummaryDiffuse large B cells in the cerebrospinal fluid (CSF-DLBCs) have offered great promise for the diagnostics and therapeutics of central nervous system lymphoma (CNSL) leptomeningeal involvement. To explore the phenotypic states of CSF-DLBCs, we analyzed the transcriptomes of more than one thousand CSF-DLBCs from six patients with CNSL diffuse large B-cell lymphoma (DLBCL) using Smart-seq2 single-cell RNA sequencing. CSF-DLBCs were defined based on abundant expression of B-cell markers, the active cell proliferation and energy metabolism properties, and immunoglobulin light chain restriction. We identified inherent heterogeneity of CSF-DLBCs, which were mainly manifested in cell cycle state, cancer-testis antigen expression, and classification based on single-cell germinal center B-cell signature. In addition, the 16 upregulated genes in CSF-DLBCs compared to various normal B cells showed great possibility in the homing effect of the CNS-DLBCL for the leptomeninges. Our results will provide insight into the mechanism research and diagnostic direction of CNSL-DLBCL leptomeningeal involvement.Graphical abstractDisplay OmittedHighlights•We first investigate single-cell transcriptome characteristics of CSF-DLBCs•CSF-DLBCs exhibited active cell proliferation and energy metabolism properties•CSF-DLBCs had cell cycle state and cancer-testis antigen expression heterogeneity•CSF-DLBCs heterogeneity was also shown on classification by sc-GC B-cell signatureBiological sciences; Neuroscience; Immunology; Bioinformatics; Omics
