摘要:SummaryIn addition to cooperatively driving transcriptional programs, emerging evidence supports transcription factors interacting with one another to modulate the outcome of binding events. As such, transcription factor interactions fine-tune the unique gene expression profiles required for developmental progression. Using human-induced pluripotent stem cells as a model of human endoderm lineage commitment, we reveal that GATA6 transiently co-localizes with EOMES at regions associated with non-endodermal lineages and is required for the repression of chromatin opening at these loci. Our results indicate that GATA6-dependent repression of chromatin remodeling, which is potentially mediated via the recruitment of NCOR1 to the EOMES interactome, contributes to definitive endoderm commitment. We anticipate that similar mechanisms are common during human development, furthering our understanding of the complex mechanisms that define cell fate decisions.Graphical abstractDisplay OmittedHighlights•GATA6 transiently occupies a subset of loci during early endoderm formation•Chromatin accessibility increased at the identified regions inGATA6−/−cells•EOMES binds independently of GATA6 at the identified sites•Recruitment of NCOR1 to the EOMES interactome is reduced inGATA6−/−cellsMolecular biology; Molecular mechanism of gene regulation; Developmental biology