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  • 标题:A database of animal metagenomes
  • 本地全文:下载
  • 作者:Ruirui Hu ; RuiYao ; Lei Li
  • 期刊名称:Scientific Data
  • 电子版ISSN:2052-4463
  • 出版年度:2022
  • 卷号:9
  • 期号:1
  • 页码:1-8
  • DOI:10.1038/s41597-022-01444-w
  • 语种:English
  • 出版社:Nature Publishing Group
  • 摘要:With the rapid development of high-throughput sequencing technology, the amount of metagenomic data (including both 16S and whole-genome sequencing data) in public repositories is increasing exponentially. However, owing to the large and decentralized nature of the data, it is still difcult for users to mine, compare, and analyze the data . The animal metagenome database (AnimalMetagenome DB) integrates metagenomic sequencing data with host information, making it easier for users to fnd data of interest . The AnimalMetagenome DB is designed to contain all public metagenomic data from animals, and the data are divided into domestic and wild animal categories . Users can browse, search, and download animal metagenomic data of interest based on diferent attributes of the metadata such as animal species, sample site, study purpose, and DNA extraction method . The AnimalMetagenome DB version 1.0 includes metadata for 82,097 metagenomes from 4 domestic animals (pigs, bovines, horses, and sheep) and 540 wild animals . These metagenomes cover 15 years of experiments, 73 countries, 1,044 studies, 63,214 amplicon sequencing data, and 10,672 whole genome sequencing data . All data in the database are hosted and available in fgshare https://doi.org/10.6084/ m9.fgshare.19728619 .
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