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  • 标题:Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions
  • 本地全文:下载
  • 作者:Kathleen Schoofs ; Annouck Philippron ; Francisco avila Cobos
  • 期刊名称:Scientific Data
  • 电子版ISSN:2052-4463
  • 出版年度:2022
  • 卷号:9
  • 期号:1
  • 页码:1-12
  • DOI:10.1038/s41597-022-01176-x
  • 语种:English
  • 出版社:Nature Publishing Group
  • 摘要:In the past decades, the incidence of esophageal adenocarcinoma has increased dramatically in Western populations . Better understanding of disease etiology along with the identifcation of novel prognostic and predictive biomarkers are urgently needed to improve the dismal survival probabilities . Here, we performed comprehensive RNA (coding and non-coding) profling in various samples from 17 patients diagnosed with esophageal adenocarcinoma, high-grade dysplastic or non-dysplastic Barrett’s esophagus . Per patient, a blood plasma sample, and a healthy and disease esophageal tissue sample were included . In total, this comprehensive dataset consists of 102 sequenced libraries from 51 samples . Based on this data, 119 expression profles are available for three biotypes, including miRNA (51), mRNA (51) and circRNA (17) . This unique resource allows for discovery of novel biomarkers and disease mechanisms, comparison of tissue and liquid biopsy profles, integration of coding and non-coding RNA patterns, and can serve as a validation dataset in other RNA landscaping studies . Moreover, structural RNA diferences can be identifed in this dataset, including protein coding mutations, fusion genes, and circular RNas.
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