Anthropometry is simple, cheap, portable and non-invasive method for the assessment of body composition. While the Nagamine and Suzuki body density prediction equation has been frequently used to estimate %BF of Japanese, the equation was developed more than 40 years ago and its applicability to the current Japanese population has not been studied. This study aimed to compare %BF results estimated from anthropometry and dual energy X-ray absorptiometry (DXA) in order to examine applicability of the Nagamine and Suzuki equation. Body composition of 45 Japanese males (age: 24.3±5.5 years, stature: 171.6±5.8 cm, body mass: 62.6±7.1 kg, %BF: 15.7±5.6%) were assessed using whole-body DXA (Hologic^® QDR-2000) scan and anthropometry using the protocol of the International Society for the Advancement of Kinanthropometry (ISAK). From anthropometric measurements %BF was calculated using the Nagamine and Suzuki equation. The results showed that the Nagamine and Suzuki equation significantly ( p <0.05) underestimated %BF of Japanese males compared to the DXA results. There was a trend towards greater underestimation as the estimated %BF values using DXA increased. New %BF prediction equations were proposed from the DXA and anthropometry results. Application of the proposed equations may assist in more accurate assessment of body fatness in Japanese males living today.