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  • 标题:Transcriptome analysis of the barley nec3 mutant reveals a potential link with abiotic stress response related signaling pathways
  • 本地全文:下载
  • 作者:Anete Keiša ; Robert Brueggeman ; Tom Drader
  • 期刊名称:Environmental and Experimental Biology
  • 印刷版ISSN:1691-8088
  • 出版年度:2010
  • 卷号:8
  • 期号:1-4
  • 页码:1-16
  • 出版社:University of Latvia
  • 摘要:The transcriptome of two fast neutron induced allelic barley mutants, FN362 and FN363, was analyzed with the Affymetrix Barley1 GeneChip microarray in order to characterize the necrotic leaf spot 3 (nec3) gene and its function. Twenty one genes, at least two- fold down-regulated in the mutants compared to the wild-type, were detected, but PCR analyses failed to identify a candidate Nec3 gene. It is possible that the probe set for the Nec3 gene is not on the Barley1 GeneChip, or that it is expressed at very low levels or the expression is confined to specific developmental stage or tissue type. Comparison of the genes differentially expressed in FN362 and FN363 mutants with publicly available Affymetrix Barley1 GeneChip expression data sets revealed significant overlap with barley abiotic stress transcriptome. The highest similarity was observed with the transcriptome of barley under drought and freezing stress. These results imply a possible involvement of the wild-type Nec3 in signaling pathways regulating abiotic stress response in barley
  • 关键词:Affymetrix GeneChip; barley; lesion mimic mutant; necrotic mutant; nec3 mutant; transcriptome analysis. ; Abbreviations: GO; gene onthology LMM; lesion mimic mutants; nec 3; necrotic leaf spot 3; TBC; transcript based cloning
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