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  • 标题:Challenges Analyzing RNA-Seq Gene Expression Data
  • 本地全文:下载
  • 作者:Liliana López-Kleine ; Cristian González-Prieto
  • 期刊名称:Open Journal of Statistics
  • 印刷版ISSN:2161-718X
  • 电子版ISSN:2161-7198
  • 出版年度:2016
  • 卷号:06
  • 期号:04
  • 页码:628-636
  • DOI:10.4236/ojs.2016.64053
  • 语种:English
  • 出版社:Scientific Research Publishing
  • 摘要:The analysis of messenger Ribonucleic acid obtained through sequencing techniques (RNA-se- quencing) data is very challenging. Once technical difficulties have been sorted, an important choice has to be made during pre-processing: Two different paths can be chosen: Transform RNA- sequencing count data to a continuous variable or continue to work with count data. For each data type, analysis tools have been developed and seem appropriate at first sight, but a deeper analysis of data distribution and structure, are a discussion worth. In this review, open questions regarding RNA-sequencing data nature are discussed and highlighted, indicating important future research topics in statistics that should be addressed for a better analysis of already available and new appearing gene expression data. Moreover, a comparative analysis of RNAseq count and transformed data is presented. This comparison indicates that transforming RNA-seq count data seems appropriate, at least for differential expression detection.
  • 关键词:RNA-Seq Analysis;Count Data;Preprocessing;Differential Expression;Gene Co-Expression Network
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