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  • 标题:A Duality Based 2-Approximation Algorithm for Maximum Agreement Forest
  • 本地全文:下载
  • 作者:Frans Schalekamp ; Anke van Zuylen ; Suzanne van der Ster
  • 期刊名称:LIPIcs : Leibniz International Proceedings in Informatics
  • 电子版ISSN:1868-8969
  • 出版年度:2016
  • 卷号:55
  • 页码:70:1-70:14
  • DOI:10.4230/LIPIcs.ICALP.2016.70
  • 出版社:Schloss Dagstuhl -- Leibniz-Zentrum fuer Informatik
  • 摘要:We give a 2-approximation algorithm for the Maximum Agreement Forest problem on two rooted binary trees. This NP-hard problem has been studied extensively in the past two decades, since it can be used to compute the Subtree Prune-and-Regraft (SPR) distance between two phylogenetic trees. Our result improves on the very recent 2.5-approximation algorithm due to Shi, Feng, You and Wang (2015). Our algorithm is the first approximation algorithm for this problem that uses LP duality in its analysis.
  • 关键词:Maximum agreement forest; phylogenetic tree; SPR distance; subtree prune-and-regraft distance; computational biology
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