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  • 标题:Faster STR-IC-LCS Computation via RLE
  • 本地全文:下载
  • 作者:Keita Kuboi ; Yuta Fujishige ; Shunsuke Inenaga
  • 期刊名称:LIPIcs : Leibniz International Proceedings in Informatics
  • 电子版ISSN:1868-8969
  • 出版年度:2017
  • 卷号:78
  • 页码:20:1-20:12
  • DOI:10.4230/LIPIcs.CPM.2017.20
  • 出版社:Schloss Dagstuhl -- Leibniz-Zentrum fuer Informatik
  • 摘要:The constrained LCS problem asks one to find a longest common subsequence of two input strings A and B with some constraints. The STR-IC-LCS problem is a variant of the constrained LCS problem, where the solution must include a given constraint string C as a substring. Given two strings A and B of respective lengths M and N, and a constraint string C of length at most min{M, N}, the best known algorithm for the STR-IC-LCS problem, proposed by Deorowicz (Inf. Process. Lett., 11:423-426, 2012), runs in O(MN) time. In this work, we present an O(mN + nM)-time solution to the STR-IC-LCS problem, where m and n denote the sizes of the run-length encodings of A and B, respectively. Since m <= M and n <= N always hold, our algorithm is always as fast as Deorowicz's algorithm, and is faster when input strings are compressible via RLE.
  • 关键词:longest common subsequence; STR-IC-LCS; run-length encoding
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