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  • 标题:Identification of individuals by trait prediction using whole-genome sequencing data
  • 本地全文:下载
  • 作者:Christoph Lippert ; Riccardo Sabatini ; M. Cyrus Maher
  • 期刊名称:Proceedings of the National Academy of Sciences
  • 印刷版ISSN:0027-8424
  • 电子版ISSN:1091-6490
  • 出版年度:2017
  • 卷号:114
  • 期号:38
  • 页码:10166-10171
  • DOI:10.1073/pnas.1711125114
  • 语种:English
  • 出版社:The National Academy of Sciences of the United States of America
  • 摘要:Prediction of human physical traits and demographic information from genomic data challenges privacy and data deidentification in personalized medicine. To explore the current capabilities of phenotype-based genomic identification, we applied whole-genome sequencing, detailed phenotyping, and statistical modeling to predict biometric traits in a cohort of 1,061 participants of diverse ancestry. Individually, for a large fraction of the traits, their predictive accuracy beyond ancestry and demographic information is limited. However, we have developed a maximum entropy algorithm that integrates multiple predictions to determine which genomic samples and phenotype measurements originate from the same person. Using this algorithm, we have reidentified an average of >8 of 10 held-out individuals in an ethnically mixed cohort and an average of 5 of either 10 African Americans or 10 Europeans. This work challenges current conceptions of personal privacy and may have far-reaching ethical and legal implications.
  • 关键词:genomic privacy ; genome sequencing ; DNA phenotyping ; phenotype prediction ; reidentification
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