首页    期刊浏览 2024年12月02日 星期一
登录注册

文章基本信息

  • 标题:“Ask Ernö”: a self-learning tool for assignment and prediction of nuclear magnetic resonance spectra
  • 本地全文:下载
  • 作者:Andrés M. Castillo ; Andrés Bernal ; Reiner Dieden
  • 期刊名称:Journal of Cheminformatics
  • 印刷版ISSN:1758-2946
  • 电子版ISSN:1758-2946
  • 出版年度:2016
  • 卷号:8
  • 期号:1
  • 页码:26
  • DOI:10.1186/s13321-016-0134-6
  • 语种:English
  • 出版社:BioMed Central
  • 摘要:We present “Ask Ernö”, a self-learning system for the automatic analysis of NMR spectra, consisting of integrated chemical shift assignment and prediction tools. The output of the automatic assignment component initializes and improves a database of assigned protons that is used by the chemical shift predictor. In turn, the predictions provided by the latter facilitate improvement of the assignment process. Iteration on these steps allows Ask Ernö to improve its ability to assign and predict spectra without any prior knowledge or assistance from human experts. This concept was tested by training such a system with a dataset of 2341 molecules and their 1H-NMR spectra, and evaluating the accuracy of chemical shift predictions on a test set of 298 partially assigned molecules (2007 assigned protons). After 10 iterations, Ask Ernö was able to decrease its prediction error by 17 %, reaching an average error of 0.265 ppm. Over 60 % of the test chemical shifts were predicted within 0.2 ppm, while only 5 % still presented a prediction error of more than 1 ppm. Ask Ernö introduces an innovative approach to automatic NMR analysis that constantly learns and improves when provided with new data. Furthermore, it completely avoids the need for manually assigned spectra. This system has the potential to be turned into a fully autonomous tool able to compete with the best alternatives currently available. Graphical abstract Self-learning loop. Any progress in the prediction (forward problem) will improve the assignment ability (reverse problem) and vice versa.
  • 关键词:Nuclear magnetic resonance ; Automatic assignment ; Chemical shift prediction ; Peak-picking ; Machine learning ; HOSE codes
国家哲学社会科学文献中心版权所有