摘要:Background and Objective: There are pros and cons surrounding the relationship between fat mass obesity associated (FTO) rs9939609 variants and the occurrence of obesity with regards to ethnicity and race. The Minangkabau ethnicity is unique compared to other ethnicities in Indonesia regarding its dietary pattern, in that this ethnic diet is high in fat intake and low in fibre intake. This study aimed to investigate the relationship between FTO rs9939609 variants and eating habits and food preferences among adolescent girls of Minangkabau ethnicity. Methodology: This study was a case control study and 275 adolescent girls (130 obese and 145 normal) were included. Tetra-primer amplification refractory mutation system- polymerase chain reaction (tetra-ARMS-PCR) was employed to examine genetic variants of FTO rs9939609. Eating habits were determined using an eating habits questionnaire and body mass index (BMI) was computed using the BMI Z-score (WHO). Results: This study revealed a significant relationship between genetic variants of FTO rs9939609 (TT, TA and AA genotypes) and higher BMI (p = 0.01). Those with the A allele were found to consume more fried food and have a lower intake of fruit (p<0.05) than those with the TT genotype. In the obese group, subjects with the A allele did not have a preference for a fruit-vegetable diet (p<0.05). Based on cooking method, subjects with the A allele preferred to eat less meat curry than those with TA and TT genotypes (p = 0.01). Conclusion: The genetic variants of FTO rs9939609 are associated with obesity, eating behaviour and food preferences in adolescents of Minangkabau ethnicity.