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  • 标题:A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae
  • 作者:Choe, Junkyoung ; Kim, Ji-Eun ; Lee, Bong-Woo
  • 期刊名称:Database
  • 印刷版ISSN:1758-0463
  • 电子版ISSN:1758-0463
  • 出版年度:2018
  • 卷号:2018
  • 期号:1
  • DOI:10.1093/database/bay047
  • 出版社:Oxford University Press
  • 摘要:It is necessary for molecular breeders to overcome the difficulties in applying abundant genomic information to crop breeding. Candidate orthologs would be discovered more efficiently in less-studied crops if the information gained from studies of related crops were used. We developed a comparative analysis tool and web-based genome viewer to identify orthologous genes based synteny as well as sequence similarity between tomato, pepper and potato. The tool has a step-by-step interface with multiple viewing levels to support the easy and accurate exploration of functional orthologs. Furthermore, it provides access to single nucleotide-polymorphism markers from the massive genetic resource pool in order to accelerate the development of molecular markers for candidate orthologs in the Solanaceae. This tool provides a bridge between genome data and breeding by supporting effective marker development, data utilization and communication. Database URL: http://tgsol.seeders.co.kr/scomp/
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