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  • 标题:Accuracy evaluation and addition of improved dihedral parameters for the MMFF94s
  • 本地全文:下载
  • 作者:Joel Wahl ; Joel Freyss ; Modest von Korff
  • 期刊名称:Journal of Cheminformatics
  • 印刷版ISSN:1758-2946
  • 电子版ISSN:1758-2946
  • 出版年度:2019
  • 卷号:11
  • 期号:1
  • 页码:1-10
  • DOI:10.1186/s13321-019-0371-6
  • 出版社:BioMed Central
  • 摘要:The Platinum dataset of protein-bound ligand conformations was used to benchmark the ability of the MMFF94s force field to generate bioactive conformations by minimization of randomly generated conformers. Torsion angle parameters that generally caused wrong geometries were reparameterized by conducting dihedral scans using ab initio calculations at the MP2 level. This reparameterization resulted in a systematic improvement of generated conformations.
  • 关键词:Force feld parameterization; Conformer generation; MMFF94s
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