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  • 标题:Technological advances and computational approaches for alternative splicing analysis in single cells
  • 本地全文:下载
  • 作者:Wei Xiong Wen ; Adam J. Mead ; Supat Thongjuea
  • 期刊名称:Computational and Structural Biotechnology Journal
  • 印刷版ISSN:2001-0370
  • 出版年度:2020
  • 卷号:18
  • 页码:332-343
  • DOI:10.1016/j.csbj.2020.01.009
  • 出版社:Computational and Structural Biotechnology Journal
  • 摘要:Alternative splicing of RNAs generates isoform diversity, resulting in different proteins that are necessary for maintaining cellular function and identity. The discovery of alternative splicing has been revolutionized by next-generation transcriptomic sequencing mainly using bulk RNA-sequencing, which has unravelled RNA splicing and mis-splicing of normal cells under steady-state and stress conditions. Single-cell RNA-sequencing studies have focused on gene-level expression analysis and revealed gene expression signatures distinguishable between different cellular types. Single-cell alternative splicing is an emerging area of research with the promise to reveal transcriptomic dynamics invisible to bulk- and gene-level analysis. In this review, we will discuss the technological advances for single-cell alternative splicing analysis, computational strategies for isoform detection and quantitation in single cells, and current applications of single-cell alternative splicing analysis and its potential future contributions to personalized medicine..
  • 关键词:Single;cell transcriptome analysis ; Alternative splicing ; Isoform ; Percent spliced;in ; Next;generation sequencing
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