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  • 标题:Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria
  • 本地全文:下载
  • 作者:R. Craig Everroad ; Rhona K. Stuart ; Brad M. Bebout
  • 期刊名称:Environmental Microbiome
  • 印刷版ISSN:2524-6372
  • 出版年度:2016
  • 卷号:11
  • 期号:1
  • 页码:1-8
  • DOI:10.1186/s40793-016-0174-6
  • 摘要:The nonheterocystous filamentous cyanobacterium, strain ESFC-1, is a recently described member of the order Oscillatoriales within the Cyanobacteria. ESFC-1 has been shown to be a major diazotroph in the intertidal microbial mat system at Elkhorn Slough, CA, USA. Based on phylogenetic analyses of the 16S RNA gene, ESFC-1 appears to belong to a unique, genus-level divergence; the draft genome sequence of this strain has now been determined. Here we report features of this genome as they relate to the ecological functions and capabilities of strain ESFC-1. The 5,632,035 bp genome sequence encodes 4914 protein-coding genes and 92 RNA genes. One striking feature of this cyanobacterium is the apparent lack of either uptake or bi-directional hydrogenases typically expected within a diazotroph. Additionally, a large genomic island is found that contains numerous low GC-content genes and genes related to extracellular polysaccharide production and cell wall synthesis and maintenance.
  • 关键词:Cyanobacteria;Nitrogen fixation;Hydrogenase;Intertidal microbial mat
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