首页    期刊浏览 2024年11月25日 星期一
登录注册

文章基本信息

  • 标题:The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
  • 本地全文:下载
  • 作者:Marcel Huntemann ; Natalia N. Ivanova ; Konstantinos Mavromatis
  • 期刊名称:Environmental Microbiome
  • 印刷版ISSN:2524-6372
  • 出版年度:2015
  • 卷号:10
  • 期号:1
  • 页码:1-6
  • DOI:10.1186/s40793-015-0077-y
  • 摘要:The DOE-JGI Microbial Genome Annotation Pipeline performs structural and functional annotation of microbial genomes that are further included into the Integrated Microbial Genome comparative analysis system. MGAP is applied to assembled nucleotide sequence datasets that are provided via the IMG submission site. Dataset submission for annotation first requires project and associated metadata description in GOLD. The MGAP sequence data processing consists of feature prediction including identification of protein-coding genes, non-coding RNAs and regulatory RNA features, as well as CRISPR elements. Structural annotation is followed by assignment of protein product names and functions.
  • 关键词:Microbial Genome Annotation;SOP;IMG;JGI
国家哲学社会科学文献中心版权所有