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  • 标题:Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records
  • 本地全文:下载
  • 作者:Scott Federhen ; Karen Clark ; Tanya Barrett
  • 期刊名称:Environmental Microbiome
  • 印刷版ISSN:2524-6372
  • 出版年度:2014
  • 卷号:9
  • 期号:3
  • 页码:1275-1277
  • DOI:10.4056/sigs.4851102
  • 摘要:Microbial genome sequence submissions to the International Nucleotide Sequence Database Collaboration (INSDC) have been annotated with organism names that include the strain identifier. Each of these strain-level names has been assigned a unique ‘taxid’ in the NCBI Taxonomy Database. With the significant growth in genome sequencing, it is not possible to continue with the curation of strain-level taxids. In January 2014, NCBI will cease assigning strain-level taxids. Instead, submitters are encouraged provide strain information and rich metadata with their submission to the sequence database, BioProject and BioSample.
  • 关键词:Haemophilus Influenzae;Microbial Genome;Taxonomy Group;NCBI Taxonomy;Genomic Standard Consortium
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