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  • 标题:Exploring the catalytic cascade of cembranoid biosynthesis by combination of genetic engineering and molecular simulations
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  • 作者:Patrick Schrepfer ; Ilke Ugur ; Sven Klumpe
  • 期刊名称:Computational and Structural Biotechnology Journal
  • 印刷版ISSN:2001-0370
  • 出版年度:2020
  • 卷号:18
  • 页码:1819-1829
  • DOI:10.1016/j.csbj.2020.06.030
  • 出版社:Computational and Structural Biotechnology Journal
  • 摘要:While chemical steps involved in bioactive cembranoid biosynthesis have been examined, the corresponding enzymatic mechanisms leading to their formation remain elusive. In the tobacco plant, Nicotiana tabacum, a putative cembratriene-ol synthase (CBTS) initiates the catalytic cascade that lead to the biosynthesis of cembratriene-4,6-diols, which displays antibacterial- and anti-proliferative activities. We report here on structural homology models, functional studies, and mechanistic explorations of this enzyme using a combination of biosynthetic and computational methods. This approach guided us to develop an efficient de novo production of five bioactive non- and monohydroxylated cembranoids. Our homology models in combination with quantum and classical simulations suggested putative principles of the CBTS catalytic cycle, and provided a possible rationale for the formation of premature olefinic side products. Moreover, the functional reconstruction of a N. tabacum -derived class II P450 with a cognate CPR, obtained by transcriptome mining provided for production of bioactive cembratriene-4,6-diols. Our combined findings provide mechanistic insights into cembranoid biosynthesis, and a basis for the sustainable industrial production of highly valuable bioactive cembranoids.
  • 关键词:Terpene cyclization ; QM/MM ; Oxy-functionalization ; Sustainable biocatalysis ; Molecular dynamics
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