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  • 标题:scadnano: A Browser-Based, Scriptable Tool for Designing DNA Nanostructures
  • 本地全文:下载
  • 作者:David Doty ; Benjamin L Lee ; Tristan Strin
  • 期刊名称:LIPIcs : Leibniz International Proceedings in Informatics
  • 电子版ISSN:1868-8969
  • 出版年度:2020
  • 卷号:174
  • 页码:9:1-9:17
  • DOI:10.4230/LIPIcs.DNA.2020.9
  • 出版社:Schloss Dagstuhl -- Leibniz-Zentrum fuer Informatik
  • 摘要:We introduce scadnano (short for "scriptable cadnano"), a computational tool for designing synthetic DNA structures. Its design is based heavily on cadnano [Douglas et al., 2009], the most widely-used software for designing DNA origami [Paul W. K. Rothemund, 2006], with three main differences: 1) scadnano runs entirely in the browser, with no software installation required. 2) scadnano designs, while they can be edited manually, can also be created and edited by a well-documented Python scripting library, to help automate tedious tasks. 3) The scadnano file format is easily human-readable. This goal is closely aligned with the scripting library, intended to be helpful when debugging scripts or interfacing with other software. The format is also somewhat more expressive than that of cadnano, able to describe a broader range of DNA structures than just DNA origami.
  • 关键词:computer-aided design; structural DNA nanotechnology; DNA origami
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