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  • 标题:A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice
  • 本地全文:下载
  • 作者:Shayne D. Wierbowski ; Tommy V. Vo ; Pascal Falter-Braun
  • 期刊名称:Proceedings of the National Academy of Sciences
  • 印刷版ISSN:0027-8424
  • 电子版ISSN:1091-6490
  • 出版年度:2020
  • 卷号:117
  • 期号:21
  • 页码:11836-11842
  • DOI:10.1073/pnas.1918068117
  • 出版社:The National Academy of Sciences of the United States of America
  • 摘要:Systematic mappings of protein interactome networks have provided invaluable functional information for numerous model organisms. Here we develop P CR-mediated L inkage of barcoded A dapters T o nucleic acid E lements for seq uencing (PLATE-seq) that serves as a general tool to rapidly sequence thousands of DNA elements. We validate its utility by generating the ORFeome for Oryza sativa covering 2,300 genes and constructing a high-quality protein–protein interactome map consisting of 322 interactions between 289 proteins, expanding the known interactions in rice by roughly 50%. Our work paves the way for high-throughput profiling of protein–protein interactions in a wide range of organisms.
  • 关键词:protein–protein interaction ; rice ; ORFeome ; next-generation sequencing ; networks
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