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  • 标题:Toward a classification of isodynamic feed-forward motifs
  • 本地全文:下载
  • 作者:Dewey T. Taylor ; John W. Cain ; Danail G. Bonchev
  • 期刊名称:Journal of Biological Dynamics
  • 印刷版ISSN:1751-3758
  • 电子版ISSN:1751-3766
  • 出版年度:2010
  • 卷号:4
  • 期号:2
  • 页码:196-211
  • DOI:10.1080/17513750903144461
  • 出版社:Taylor & Francis
  • 摘要:A preceding study analysed how the topology of network motifs affects the overall rate of the underlying biochemical processes. Surprisingly, it was shown that topologically non-isomorphic motifs can still be isodynamic in the sense that they exhibit the exact same performance rate. Because of the high prevalence of feed-forward functional modules in biological networks, one may hypothesize that evolution tends to favour motifs with faster dynamics. As a step towards ranking the efficiency of feed-forward network motifs, we use a linear flow model to prove theorems establishing that certain classes of motifs are isodynamic. In partitioning the class of all motifs on n nodes into equivalence classes based upon their dynamics, we establish a basis for comparing the efficiency/performance rates of different motifs. The potential biological importance of the theorems is briefly discussed and is the subject of an ongoing large-scale project.
  • 关键词:feed-forward motif; isodynamic; ordinary differential equations
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