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  • 标题:A Method for Nucleotide Sequence Analysis
  • 本地全文:下载
  • 作者:Kozarzewski Bohdan
  • 期刊名称:Computational Methods in Science and Technology
  • 印刷版ISSN:1505-0602
  • 出版年度:2012
  • 卷号:18
  • 期号:1
  • 页码:5-10
  • DOI:10.12921/cmst.2012.18.01.5-10
  • 出版社:Poznan Supercomputing and Networking Center
  • 摘要:

    Symbolic sequence decomposition into a set of consecutive, distinct subsequences (mers) is presented. Several statistical distributions of nucleotide subsequences are defined and analysed. Sequence entropy and similarity between sequences in terms of mer lengths distribution are defined. An alignment-free method of phylogenetic treeconstruction is proposed.

  • 关键词:phylogenetic tree; sequence parsing; similarity measure
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