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  • 标题:Bisque: Advances in Bioimage Databases
  • 本地全文:下载
  • 作者:Kristian Kvilekval ; Dmitry Fedorov ; Utkarsh Gaur
  • 期刊名称:Bulletin of the Technical Committee on Data Engineering
  • 出版年度:2012
  • 卷号:35
  • 期号:3
  • 出版社:IEEE Computer Society
  • 摘要:Biological image databases have quickly replaced the personal media collections of individual scien-tists. Such databases permit objective comparisons, benchmarking, and data-driven science. As thesecollections have grown using advanced (and automated) imaging tools and microscopes, scientists needhigh-throughput large-scale statistical analysis of the data.Traditional databases and standalone analysis tools are not suited for image-based scientific en-deavors due to subjectivity, non-uniformity and uncertainty of the primary data and their analyses. Thispaper describes our image-database platform Bisque, which combines .exible data structuring, uncer-tain data management and high-throughput analysis. In particular, we examine: (i) Management ofscientific images and metadata for experimental science where the data model may change from experi-ment to experiment; (ii) Providing easy provisioning for high-throughput and large-scale image analysisusing cluster/cloud resources; (iii) Strategies for managing uncertainty in measurement and analysis sothat important aspects of the data are not prematurely filtered
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