On the basis of the prior models about the vertical vibration of the hydraulic vibration source, this research introduced a sub-system—head cover. Head cover is one of the main paths when vibration is transferred from the water vibration source to the stable structure. This essay aims to analyze the hydraulic turbine vertical vibration power flow in the head cover system. The research is based on the power flow theory and the probability perturbation method; meanwhile, it considered on the reciprocal coupling effect of the water machine parts and power house structure, etc. Therefore, the results of can clearly provide the random power flow of the vibration transfer path system, which including the head cover system, in frequency domain by given of some uncertain factors in one project. In conclusions, the research provide an overall analysis on the hydropower station vertical vibration transfer path; and it suggest some simplified and efficient solutions in the analysis on the vibration path with some random parameters.