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  • 标题:On the dephasing of genetic oscillators
  • 本地全文:下载
  • 作者:Davit A. Potoyan ; Peter G. Wolynes
  • 期刊名称:Proceedings of the National Academy of Sciences
  • 印刷版ISSN:0027-8424
  • 电子版ISSN:1091-6490
  • 出版年度:2014
  • 卷号:111
  • 期号:6
  • 页码:2391-2396
  • DOI:10.1073/pnas.1323433111
  • 语种:English
  • 出版社:The National Academy of Sciences of the United States of America
  • 摘要:The digital nature of genes combined with the associated low copy numbers of proteins regulating them is a significant source of stochasticity, which affects the phase of biochemical oscillations. We show that unlike ordinary chemical oscillators, the dichotomic molecular noise of gene state switching in gene oscillators affects the stochastic dephasing in a way that may not always be captured by phenomenological limit cycle-based models. Through simulations of a realistic model of the NF{kappa}B/I{kappa}B network, we also illustrate the dephasing phenomena that are important for reconciling single-cell and population-based experiments on gene oscillators.
  • 关键词:gene networks ; master equation ; stochastic simulations
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