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  • 标题:Investigation of the Ergopeptide Epimerization Process
  • 本地全文:下载
  • 作者:Karsten Andrae ; Stefan Merkel ; Vedat Durmaz
  • 期刊名称:Computation
  • 电子版ISSN:2079-3197
  • 出版年度:2014
  • 卷号:2
  • 期号:3
  • 页码:102-111
  • DOI:10.3390/computation2030102
  • 语种:English
  • 出版社:MDPI Publishing
  • 摘要:Ergopeptides, like ergocornine and a-ergocryptine, exist in an S- and in an R-configuration. Kinetic experiments imply that certain configurations are preferred depending on the solvent. The experimental methods are explained in this article. Furthermore, computational methods are used to understand this configurational preference. Standard quantum chemical methods can predict the favored configurations by using minimum energy calculations on the potential energy landscape. However, the explicit role of the solvent is not revealed by this type of methods. In order to better understand its influence, classical mechanical molecular simulations are applied. It appears from our research that “folding” the ergopeptide molecules into an intermediate state (between the S- and the R-configuration) is mechanically hindered for the preferred configurations.
  • 关键词:ergopeptide; epimerization; hybrid monte carlo; molecular dynamics; conformation; quantum mechanics
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