首页    期刊浏览 2025年12月19日 星期五
登录注册

文章基本信息

  • 标题:Comparison of human cell signaling pathway databases—evolution, drawbacks and challenges
  • 本地全文:下载
  • 作者:Chowdhury, Saikat ; Sarkar, Ram Rup
  • 期刊名称:Database
  • 印刷版ISSN:1758-0463
  • 电子版ISSN:1758-0463
  • 出版年度:2015
  • 卷号:2015
  • DOI:10.1093/database/bau126
  • 出版社:Oxford University Press
  • 摘要:Elucidating the complexities of cell signaling pathways is of immense importance to gain understanding about various biological phenomenon, such as dynamics of gene/protein expression regulation, cell fate determination, embryogenesis and disease progression. The successful completion of human genome project has also helped experimental and theoretical biologists to analyze various important pathways. To advance this study, during the past two decades, systematic collections of pathway data from experimental studies have been compiled and distributed freely by several databases, which also integrate various computational tools for further analysis. Despite significant advancements, there exist several drawbacks and challenges, such as pathway data heterogeneity, annotation, regular update and automated image reconstructions, which motivated us to perform a thorough review on popular and actively functioning 24 cell signaling databases. Based on two major characteristics, pathway information and technical details, freely accessible data from commercial and academic databases are examined to understand their evolution and enrichment. This review not only helps to identify some novel and useful features, which are not yet included in any of the databases but also highlights their current limitations and subsequently propose the reasonable solutions for future database development, which could be useful to the whole scientific community.
国家哲学社会科学文献中心版权所有